BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB017B01SP1|AL427110
(594 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1805 1160 0.0
3x_Contig180 233 3e-61
>3x_Contig1805
Length = 19369
Score = 1160 bits (582), Expect = 0.0
Identities = 587/592 (99%)
Strand = Plus / Minus
Query: 3 tttttgagtttttggagactggtggagttggttattgtcaagcatgcagtaatcctccag 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4575 tttttgagtttttggagactggtggagttggttattgtcaagcatgcagtaatcctccag 4516
Query: 63 aacctsybttcaatggcaaacaagagcctttcagctcagacacagataaaagctttgttc 122
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4515 aacctgtgttcaatggcaaacaagagcctttcagctcagacacagataaaagctttgttc 4456
Query: 123 ccttagactgacctgctaaacccatctttttttttaaaagagctgcataaaaggccattc 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4455 ccttagactgacctgctaaacccatctttttttttaaaagagctgcataaaaggccattc 4396
Query: 183 taagctaaagaacaaagctttggaataaagaaattccaaatccgacacttgggttctatc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4395 taagctaaagaacaaagctttggaataaagaaattccaaatccgacacttgggttctatc 4336
Query: 243 cgaagccggaatttttctttattttgttatcactgctcctaagtacgggcatttgaatgg 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4335 cgaagccggaatttttctttattttgttatcactgctcctaagtacgggcatttgaatgg 4276
Query: 303 gcagagctgcatttttctgcgtagatcttttcgaaatacctagatcgacagattggacat 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4275 gcagagctgcatttttctgcgtagatcttttcgaaatacctagatcgacagattggacat 4216
Query: 363 gcaatttttttctatgcacgacgcacaaagaatgaagattggaaagaaaaacaggaaacg 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4215 gcaatttttttctatgcacgacgcacaaagaatgaagattggaaagaaaaacaggaaacg 4156
Query: 423 aaaaaccaaaaaaaaaaaaagmaaagcacgtttgatattgcaataacacaagcgcaagaa 482
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 4155 aaaaaccaaaaaaaaaaaaagcaaagcacgtttgatattgcaataacacaagcgcaagaa 4096
Query: 483 taactccagcagcaatgaaaaacgtttgtagatctttcgaggaatgtttcttgtttctat 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4095 taactccagcagcaatgaaaaacgtttgtagatctttcgaggaatgtttcttgtttctat 4036
Query: 543 ttttgttccgagaaatctttacttccgtttttttttgtgggcgamcgtacaa 594
|||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 4035 ttttgttccgagaaatctttacttccgtttttttttgtgggcgaccgtacaa 3984
>3x_Contig180
Length = 1260
Score = 233 bits (117), Expect = 3e-61
Identities = 436/543 (80%), Gaps = 1/543 (0%)
Strand = Plus / Plus
Query: 34 ttattgtcaagcatgcagtaatcctccagaacctsybttcaatggcaaacaagagccttt 93
||||| |||| ||| || |||||||||| ||||| |||||| ||||||| | |||||
Sbjct: 642 ttattttcaatcattcattaatcctccataaccttttttcaatttcaaacaatatccttt 701
Query: 94 cagctcagacacagataaaagctttgttcccttagactgacctgctaaacccatcttttt 153
|| |||| ||||| |||| | |||| |||||||| ||| |||| ||||||||||||||||
Sbjct: 702 catctcatacacatataatatcttttttcccttatacttaccttctaaacccatcttttt 761
Query: 154 ttttaaaagagctgcataaaaggccattctaagctaaagaacaaagctttggaataaaga 213
|||||| | | || ||||| | ||||||||| ||||| |||||| |||| |||||| |
Sbjct: 762 ttttaatatatcttcataatattccattctaatctaaataacaaatctttttaataaata 821
Query: 214 aattccaaatccgacacttgggttctatccgaagccggaatttttctttattttgttatc 273
|||||||||||| |||||| |||||||| || || |||||||||||||||| |||||
Sbjct: 822 aattccaaatcctacactttttttctatcctaatccttaatttttctttatttttttatc 881
Query: 274 actgctcctaagtacgggcatttgaatgggcagagctgcatttttctgcgtagatctttt 333
||| ||||||| ||| ||||| ||| || | || ||||||||| | || |||||||
Sbjct: 882 acttctcctaattactttcattttaattttcatatcttcatttttcttcttatatctttt 941
Query: 334 cgaaata-cctagatcgacagattggacatgcaatttttttctatgcacgacgcacaaag 392
| ||||| |||| ||| ||| ||| |||| |||||||||||||| ||| || ||||||
Sbjct: 942 ctaaatatcctatatctacatattttacattcaatttttttctattcactactcacaaat 1001
Query: 393 aatgaagattggaaagaaaaacaggaaacgaaaaaccaaaaaaaaaaaaagmaaagcacg 452
||| || ||| ||| ||||||| |||| |||||||||||||||||||| ||| |||
Sbjct: 1002 aattaatattttaaataaaaacattaaactaaaaaccaaaaaaaaaaaaatcaaatcact 1061
Query: 453 tttgatattgcaataacacaagcgcaagaataactccagcagcaatgaaaaacgtttgta 512
||| ||||| | ||||||||| | ||| | | |||||| | | || |||||| ||| ||
Sbjct: 1062 ttttatatttctataacacaatctcaatatttactccatcttctattaaaaactttttta 1121
Query: 513 gatctttcgaggaatgtttcttgtttctatttttgttccgagaaatctttacttccgttt 572
||||||| | ||| |||||| ||||||||||| |||| | |||||||||||||| |||
Sbjct: 1122 tatctttctattaatttttcttttttctattttttttcctataaatctttacttcctttt 1181
Query: 573 ttt 575
|||
Sbjct: 1182 ttt 1184
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,723
Number of Sequences: 1807
Number of extensions: 13723
Number of successful extensions: 602
Number of sequences better than 1.0e-20: 2
length of query: 594
length of database: 10,358,551
effective HSP length: 16
effective length of query: 578
effective length of database: 10,329,639
effective search space: 5970531342
effective search space used: 5970531342
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)